CEAZA
Molecular characterization of an inhibitor of NF-κB in the scallop Argopecten purpuratus: First insights into its role on antimicrobial peptide regulation in a mollusk.
Oyanedel, D., Gonzalez, R., Flores-Herrera, P., Brokordt, K., Rosa, R., Mercado, L., & Schmitt, P.
Inhibitors of nuclear factor kappa B (IκBs) are major control components of the Rel/NF-κB signaling pathway, a key regulator in the modulation of the expression of immune-related genes in vertebrates and invertebrates. The activation of the Rel/NF-κB signaling pathway depends largely in the degradation of IκB proteins and thus, IκBs are a main target for the identification of genes whose expression is controlled by Rel/NF-κB pathway. In order to identify such regulation in bivalve mollusks, the cDNA sequence encoding an IκB protein was characterized in the scallop Argopecten purpuratus, ApIκB. The cDNA sequence of ApIκB is comprised of 1480 nucleotides with a 1086 bp open reading frame encoding for 362 amino acids. Bioinformatics analysis showed that ApIκB displays the conserved features of IκB proteins. The deduced amino acid sequence consists of a 39.7 kDa protein, which has an N-terminal degradation motif, six ankyrin repeats and a C-terminal phosphorylation site motif. Phylogenetic analysis revealed a high degree of identity between ApIκB and other IκBs from mollusks, but also to arthropod cactus proteins and vertebrate IκBs. Tissue expression analysis indicated that ApIκB is expressed in all examined tissues and it is upregulated in circulating hemocytes from scallops challenged with the pathogenic Gram-negative bacterium Vibrio splendidus. After inhibiting ApIκB gene expression using the RNA interference technology, the gene expression of the antimicrobial peptide big defensin was upregulated in hemocytes from non-challenged scallops. Results suggest that ApIκB may control the expression of antimicrobial effectors such as big defensin via a putative Rel/NF-κB signaling pathway. This first evidence will help to deepen the knowledge of the Rel/NF-κB conserved pathway in scallops.
Año: 2016
Palabras claves: Signaling pathway; NF-κB pathway; Inhibition of nuclear factor kappa B; Antimicrobial peptide; Big defensin; Immunoregulation; Scallop; RNA interference.
Referencia APA: Oyanedel, D., Gonzalez, R., Flores-Herrera, P., Brokordt, K., Rosa, R., Mercado, L., & Schmitt, P. (2016). Molecular characterization of an inhibitor of NF-κB in the scallop Argopecten purpuratus: First insights into its role on antimicrobial peptide regulation in a mollusk. Fish & Shellfish Immunology, 52, 85-93.
3-D surface properties of glacier penitentes over an ablation season, measured using a Microsoft Xbox Kinect.
Nicholson L. I., Pętlicki M., Partan B., and MacDonell S.
In this study, the first small-scale digital surface models (DSMs) of natural penitentes on a glacier surface were produced using a Microsoft Xbox Kinect sensor on Tapado Glacier, Chile (30°08′ S, 69°55′ W). The surfaces produced by the complete processing chain were within the error of standard terrestrial laser scanning techniques, but insufficient overlap between scanned sections that were mosaicked to cover the sampled areas can result in three-dimensional (3-D) positional errors of up to 0.3 m. Between November 2013 and January 2014 penitentes become fewer, wider and deeper, and the distribution of surface slope angles becomes more skewed to steep faces. Although these morphological changes cannot be captured by manual point measurements, mean surface lowering of the scanned areas was comparable to that derived from manual measurements of penitente surface height at a minimum density of 5 m−1 over a 5 m transverse profile. Roughness was computed on the 3-D surfaces by applying two previously published geometrical formulae: one for a 3-D surface and one for single profiles sampled from the surface. Morphometric analysis shows that skimming flow is persistent over penitentes, providing conditions conducive for the development of a distinct microclimate within the penitente troughs. For each method a range of ways of defining the representative roughness element height was used, and the calculations were done both with and without application of a zero displacement height offset to account for the likelihood of skimming air flow over the closely spaced penitentes. The computed roughness values are on the order of 0.01–0.10 m during the early part of the ablation season, increasing to 0.10–0.50 m after the end of December, in line with the roughest values previously published for glacier ice. Both the 3-D surface and profile methods of computing roughness are strongly dependent on wind direction. However, the two methods contradict each other in that the maximum roughness computed for the 3-D surface coincides with airflow across the penitente lineation, while maximum roughness computed for sampled profiles coincides with airflow along the penitente lineation. These findings highlight the importance of determining directional roughness and wind direction for strongly aligned surface features and also suggest more work is required to determine appropriate geometrical roughness formulae for linearized features.
Año: 2016
Palabras claves:
Referencia APA: Nicholson L. I., Pętlicki M., Partan B., and MacDonell S. (2016). 3-D surface properties of glacier penitentes over an ablation season, measured using a Microsoft Xbox Kinect. The Cryosphere, 10(5), 1897.
Late Holocene environmental changes as recorded in the sediments of high Andean Laguna Chepical, Central Chile (32° S; 3050ma. sl).
Martel-Cea, A., Maldonado, A., Grosjean, M., Alvial, I., de Jong, R., Fritz, S. C., & von Gunten, L.
We present a reconstruction of environmental changes from sediments of high-altitude Laguna Chepical in the subtropical Andes of Central Chile (32°16′S; 70°30′W, 3050 m a.s.l.) for the past 3100 years. Based on subfossil pollen, microscopic charcoal and diatoms, we inferred changes in moisture (related to precipitation) and ice-cover/ice-free season (related to summer temperature) at decadal to millennial scales. Sustained wetter and colder summer temperatures than today prevailed between 1100 BC and ca. AD 1. Afterward, decreasing pollen accumulation rates and increased fire activity suggest drier conditions and possibly enhanced seasonality and/or inter-annual climate variability. Frequent changes between cold and warm summers were observed, particularly for the last 1000 years. About AD 1250 (during the Medieval Climate Anomaly), wet years and early break up of ice-cover occurred in central Chile, which is today typical for El Niño-like mean conditions. Conversely, and with the exception of a few wet pulses, a generally dry period with extended ice-cover (cool summers) was observed between AD 1400 and AD 1850 (Little Ice Age). This can be interpreted as a trend toward more La Niña-like mean conditions. Recent climate change and human disturbances during the last 100 years have prompted changes in diatom and plant communities that are unprecedented in the late Holocene. First, planktonic diatoms increased as a result of hydraulic interventions in the lake during the late 19th century, and secondly, the Andean vegetation shifted upward as result of recent warming, and the frequency of arboreal taxa was significantly reduced. At the same time peaks of fire activity were observed.
Año: 2016
Palabras claves: Late Holocene; ENSO; Pollen; Diatom; Andes; Climate change.
Referencia APA: Martel-Cea, A., Maldonado, A., Grosjean, M., Alvial, I., de Jong, R., Fritz, S. C., & von Gunten, L. (2016). Late Holocene environmental changes as recorded in the sediments of high Andean Laguna Chepical, Central Chile (32° S; 3050ma. sl). Palaeogeography, Palaeoclimatology, Palaeoecology, 461, 44-54.
Dairy slurry application to grasslands and groundwater quality in a volcanic soil.
Huertas, J., Cuevas, J. G., Paulino, L., Salazar, F., Arumí, J. L., & Dörner, J.
Research in volcanic-ash soils has shown that they largely capture the dairy slurry following application to land; however, their hydrological properties would favor nutrient leaching. Our objective was to evaluate the contribution of biogeochemical and hydrological controls on the pollution of groundwater by cattle slurry applied to a permanent grassland growing on a volcanic soil. We sampled groundwater chemistry since 10 months before the fertilization (three samplings), and 16 months after, with samplings 1-2 months after the fertigation. Following fertilization, ammonium, exchangeable potassium, and magnesium soil concentrations increased in the fertilized plots compared to the control plots. In contrast, no effect of slurry on groundwater quality was detected, with the exception of dissolved organic nitrogen, a main component of dairy slurry that increased in the groundwater below the fertilized plots. Despite the fact that biogeochemical controls predominate, hydrological aspects would be important when rainfall is high, evapotranspiration is low, groundwater table level is high, and water movement in the saturated zone increases. We concluded that the application of slurry to pastures under rates comparable to a high fertilization in the short term, does not generally impact the groundwater quality in volcanic ash-derived soils.
Año: 2016
Palabras claves: Andisol; groundwater pollution; hydraulic properties; saturated zone; dissolved organic nitrogen.
Referencia APA: Huertas, J., Cuevas, J. G., Paulino, L., Salazar, F., Arumí, J. L., & Dörner, J. (2016). Dairy slurry application to grasslands and groundwater quality in a volcanic soil. Journal of soil science and plant nutrition, 16(3), 745-762.
Disentangling the effects of propagule supply and environmental filtering on the spatial structure of a rocky shore metacommunity.
Valdivia, N., Aguilera, M., Navarrete, S., & Broitman, B.
Environment-driven variation in the supply of individuals to local assemblages can determine patterns of community structure. Alternatively, local environmental conditions can determine the type of species that can be successfully established in a given community. Most communities are probably found somewhere between these 2 extremes, but few studies have attempted to disentangle their effects in a community-wide context. Using multivariate approaches in rocky shore communities, we showed that environmental variables (i.e. sea surface temperature and wind stress), the benthic abundance of 108 species of invertebrates and macroalgae, and recruitment rates of invertebrates all shared significant spatial and temporal patterns of variability across a 400 km shoreline marked by the presence of a prominent upwelling centre. Variance-partition analyses for the invertebrates with pelagic development showed that spatially structured environmental filtering alone explained only 7% of the variation in community structure. In contrast, the combination of environmental conditions and recruitment variation explained 45% of the variability in community structure and an additional 18% was jointly explained by recruitment and spatial relationships among sampling sites. Unexplained variation (41%) can be attributed to factors like local species interactions that are robust to environmental variability. Therefore, environment-driven variation in recruitment rates can have, in comparison to pure environmental filtering, stronger effects on the structure of this metacommunity. Our results can serve as a foundation for predictive models of the response of biodiversity to climate change and other human-induced disturbances, which are predicted to alter local environmental conditions and dispersal pathways.
Año: 2015
Palabras claves: Metacommunity, Recruitment, Environmental filtering, Dispersal, Biodiversity, Chile, Marine, Mesoscale.
Referencia APA: Valdivia, N., Aguilera, M., Navarrete, S., & Broitman, B. (2015). Disentangling the effects of propagule supply and environmental filtering on the spatial structure of a rocky shore metacommunity. Marine Ecology Progress Series, 538, 67-79.
Human harvesting impacts on managed areas: ecological effects of socially-compatible shellfish reserves.
Aswani, S., Flores, C., & Broitman, B.
We examined how human harvesting impacts on managed areas affect the abundance and size distribution of the edible mangrove shellfish Anadara granosa and Polymesoda spp. in the Roviana Lagoon, Solomon Islands. We tested two hypotheses: (1) in areas permanently and temporally closed to human exploitation, abundance and size distribution of these shellfish species is significantly greater than in sites open to exploitation and (2) moderate human disturbance of shell beds, particularly of Polymesoda spp., increases their abundance. Firstly, we studied perceptions of environmental states and processes coupled to foraging and management interventions to assess sociocultural influences on harvesting practices and ascertain the types of management regime that people would consider in a context where poaching and interloping are common practices. Secondly, we compared shellfish abundance and shell size from areas that were permanently protected, temporally reserved for communal harvest, and permanently open for exploitation. Thirdly, drawing from women’s local knowledge, we measured the abundance of Polymesoda spp. in relation to mud compactness in quadrats across the three management regimes. Results showed that both species were significantly more abundant in permanent and temporally closed sites than in open sites. In the mud compactness study, however, while shell abundance was greater in moderately compacted quadrats, there was no statistical relationship between mud compactness and shell abundance within or across the three management regimes. Results suggest that even under the strong impacts of poaching, temporally closed areas have more clams than open areas and are as effective as areas that are permanently closed nominally. The results also suggest that human harvesting regimes can influence the effectiveness of local management decisions and thus are important when designing community-based conservation programs in the Solomon Islands and other Pacific Islands.
Año: 2015
Palabras claves: Ecological disturbance, Foraging, MPAs, Shellfish, Ecological impacts, Social acceptability, Solomon Islands.
Referencia APA: Aswani, S., Flores, C., & Broitman, B. (2015). Human harvesting impacts on managed areas: ecological effects of socially-compatible shellfish reserves. Rev Fish Biol Fisheries, 25(1), 217-230.
Response of photosynthesis and respiration to temperature under water deficit in two evergreen Nothofagus species.
Sanhueza, C., Bascunan-Godoy, L., Turnbull, M., & Corcuera, L.
Respiration and photosynthesis were studied in two Nothofagus species with different drought tolerance in order to evaluate the effect of water deficit on foliar carbon balance and the possible role of the alternative pathway on respiratory adjustment. We propose that under severe water deficit the more drought-tolerant species N. dombeyi is able to decrease its respiration more than the less drought-tolerant species N. nitida, thus carbon gain could be maintained when photosynthesis is suppressed by drought. Dark respiration (Rd) and carbon assimilation under saturating light (Asat) were evaluated under seasonal field conditions and during drying and re-watering cycles under glasshouse. In addition, respiratory pathway changes were evaluated by oxygen isotope fractionation. In the field, N. dombeyi displayed greater light-saturated photosynthetic capacity than N. nitida, but Rd did not differ between species during summer. In the glasshouse, N. dombeyi displayed an unchanged rate of Rd and increased carbon loss under severe water deficit. Nothofagus nitida displayed a more flexible respiratory response to water deficit, with a lower thermal sensitivity of respiration (decrease in Q10) and a decrease in Rd. This contributed to maintaining leaf carbon balance during the water deficit period. Respiratory electron flow was mainly via the cytochrome pathway for both species and under all treatments, indicating no strong participation of alternative respiration. Our results suggest that under severe water stress, N. dombeyi could be more injured than N. nitida and that the lack of control in the carbon loss under prolonged periods of drought could be limiting for its survival.
Año: 2015
Palabras claves: Alternative oxidase; carbon balance; drought tolerance; isotopic discrimination; temperate forest.
Referencia APA: Sanhueza, C., Bascunan-Godoy, L., Turnbull, M., & Corcuera, L. (2015). Response of photosynthesis and respiration to temperature under water deficit in two evergreen Nothofagus species. Plant Species Biology, 30(3), 163-175.
A hydrogeochemistry and isotopic approach for the assessment of surface water–groundwater dynamics in an arid basin: the Limarí watershed, North-Central Chile.
Oyarzún, R., Jofré, E., Morales, P., Maturana, H., Oyarzún, J., & Kretschmer, N. et al.
This paper describes the results of a hydrochemistry and isotopic study of surface water and groundwater dynamics at the Limarí River basin, arid North-Central Chile. The study involved two sampling campaigns, performed in April (Fall, at the end of the irrigation season) and December 2010 (late Spring, at the peak of the irrigation season). The main results show the effect of La Paloma and Hurtado dams on the chemical and isotopic compositions of the Grande and Hurtado rivers (main tributaries of the Limarí River), the influence of return flows to the Limarí River from surface water irrigation in agricultural areas, the local effects of metallurgical operations in the El Ingenio Creek, the effect of water–rock interaction processes, and the nearby coastal belt influence on the Punitaqui Creek area and the lower part of the Limarí River. In addition, this study shows an active interaction between surface water and shallow groundwater, and a minor importance of local precipitation events, on the hydrological behavior in the study area. An exception is the Rinconada de Punitaqui zone where the results are consistent with the origin of the water being associated with local precipitation. Also, sources of sulfate, which is present in high levels especially in surface waters, have been assessed. The results of this study, based on an integrated use of chemical and isotopic tracers, provide sound and useful information to establish the level of interaction between surface water and groundwater, allowing the development of a hydrological conceptual model for the area.
Año: 2015
Palabras claves: Environmental isotopes, River−aquifer interaction, Flow conceptual model.
Referencia APA: Jofré, E., Morales, P., Maturana, H., Oyarzún, J., & Kretschmer, N. et al. (2015). A hydrogeochemistry and isotopic approach for the assessment of surface water–groundwater dynamics in an arid basin: the Limarí watershed, North-Central Chile. Environ Earth Sci, 73(1), 39-55.
A holistic picture of Austronesian migrations revealed by phylogeography of Pacific paper mulberry.
Chang, C., Liu, H., Moncada, X., Seelenfreund, A., Seelenfreund, D., & Chung, K.
The peopling of Remote Oceanic islands by Austronesian speakers is a fascinating and yet contentious part of human prehistory. Linguistic, archaeological, and genetic studies have shown the complex nature of the process in which different components that helped to shape Lapita culture in Near Oceania each have their own unique history. Important evidence points to Taiwan as an Austronesian ancestral homeland with a more distant origin in South China, whereas alternative models favor South China to North Vietnam or a Southeast Asian origin. We test these propositions by studying phylogeography of paper mulberry, a common East Asian tree species introduced and clonally propagated since prehistoric times across the Pacific for making barkcloth, a practical and symbolic component of Austronesian cultures. Using the hypervariable chloroplast ndhF-rpl32 sequences of 604 samples collected from East Asia, Southeast Asia, and Oceanic islands (including 19 historical herbarium specimens from Near and Remote Oceania), 48 haplotypes are detected and haplotype cp-17 is predominant in both Near and Remote Oceania. Because cp-17 has an unambiguous Taiwanese origin and cp-17–carrying Oceanic paper mulberries are clonally propagated, our data concur with expectations of Taiwan as the Austronesian homeland, providing circumstantial support for the “out of Taiwan” hypothesis. Our data also provide insights into the dispersal of paper mulberry from South China “into North Taiwan,” the “out of South China–Indochina” expansion to New Guinea, and the geographic origins of post-European introductions of paper mulberry into Oceania.
Año: 2015
Palabras claves: Broussonetia papyrifera, commensal approach, DNA of herbarium specimens, out of Taiwan hypothesis, Voyaging Corridor Triple I .
Referencia APA: Chang, C., Liu, H., Moncada, X., Seelenfreund, A., Seelenfreund, D., & Chung, K. (2015). A holistic picture of Austronesian migrations revealed by phylogeography of Pacific paper mulberry. Proceedings Of The National Academy Of Sciences, 112(44), 13537-13542.
Fungal endophytes associated with roots of nurse cushion species have positive effects on native and invasive beneficiary plants in an alpine ecosystem.
Molina-Montenegro, M., Oses, R., Torres-Díaz, C., Atala, C., Núñez, M., & Armas, C.
Facilitation has been proposed to be a fundamental mechanism for plant coexistence, being particularly important in highly stressful environments such as alpine environments. In this type of environment, species called “cushion plants” can ameliorate the stressful conditions, acting as nurses for other plants. Of the several mechanisms proposed in the positive-interactions framework, plant–microorganism interaction may be one of the most common, but least documented. Here we show that the presence of endophytes isolated from the roots of cushion plants Laretia acaulis can play a fundamental role in the establishment, performance and survival of both native and exotic plant seedlings that are known to be facilitated by the cushion species.
To test this, we measured survival and growth of two native and one invasive species at 3200 m in the Andes of Central Chile. Plants were grown inside artificial cushions filled with native soil, with or without sterilization, and with or without fungal endophytic inoculation to evaluate the role of fungal endophytes on survival and growth. In addition, we conducted a second experiment in a greenhouse with the invasive species to evaluate the effect of fungal endophytic infection/association on plant ecophysiological performance, dry biomass and seed output.
Overall, our results showed a strong positive effect of fungal endophytes on the survival and growth of both native and invasive species. Moreover, maximum quantum efficiency (Fv/Fm), biomass accumulation and seed production were enhanced in the invasive species when soils were inoculated with endophytes. Thus, facilitation by root endophytic fungi on native and invasive alpine plants could determine survival and establishment in this harsh environment.
Several studies have shown that direct facilitation by cushion plants in alpine environments improves the performance and fitness of both native and exotic plants. Our results suggest that there are indirect effects, mediated by microorganism associations that may also help to explain the successful establishment of native and invasive species in these environments. If indirect plant–plant facilitation through root fungal endophytes proves to be a widespread phenomenon in alpine ecosystems, it could be a key component in the structuring of plant communities in those stressful environments.
Año: 2015
Palabras claves: Cushion plants; Endophytic fungi; Facilitation; Invasive species; Positive interactions; Taraxacum officinale.
Referencia APA: Molina-Montenegro, M., Oses, R., Torres-Díaz, C., Atala, C., Núñez, M., & Armas, C. (2015). Fungal endophytes associated with roots of nurse cushion species have positive effects on native and invasive beneficiary plants in an alpine ecosystem. Perspectives In Plant Ecology, Evolution And Systematics, 17(3), 218-226.
Ecophysiological responses to drought followed by re-watering of two native Chilean swamp forest plants: Myrceugenia exsucca (DC.) O. Berg and Luma chequen (Molina) A. Gray
Bascuñán-Godoy, L., Alcaíno, C., Carvajal, D., Sanhueza, C., Montecinos, S., & Maldonado, A.
Myrceugenia exsucca (DC.) O. Berg and Luma chequen (Molina) A. Gray are two predominant species of Myrtaceae from the swamp forest which are strongly threatened by destruction of their habitat. Conservation programs include the creation of new protected areas which often have different environmental conditions respect their natural habitat. The drought tolerance and the capability to restore their physiological performance after stress relief are characteristic of great importance for the successful conservation programs on these kinds of plants. Understanding how these plants respond to episodic drought and watering pulse was the principal aim of this work. In this sense, water relations, soluble sugars, pigments and photosystem II (PSII) performance were studied. In general the water relationships were less affected by drought in L. chequen than in M. exsucca which was consistent with a higher maintenance of photochemical quenching (qP) in the first one. In addition, L. chequen exhibited complete recovery of water potential and maximum PSII efficiency and increasing the proportion of photochemical processes and soluble sugars related with a higher photosynthetic recovery. Contrastingly, M. exsucca was unable to recover its water potential and the proportion of open reaction centers of PSII under re-watering indicating a lower capacity of recovery. These results shown different capabilities to cope and reestablish physiological performance after water scarcity episode between these two native chilean swamp forest plants. We hope that these results will be important for conservation and re-vegetation managements programs.
Año: 2015
Palabras claves: Myrtaceae, photosynthetic performance, water deficit, re-watering.
Referencia APA: Bascuñán-Godoy, L., Alcaíno, C., Carvajal, D., Sanhueza, C., Montecinos, S., & Maldonado, A. (2015). Ecophysiological responses to drought followed by re-watering of two native Chilean swamp forest plants: Myrceugenia exsucca (DC.) O. Berg and Luma chequen (Molina) A. Gray. Gayana Bot., 72(2), 203-212.
Castaways can’t be choosers — Homogenization of rafting assemblages on floating seaweeds.
Gutow, L., Beermann, J., Buschbaum, C., M. Rivadeneira, M., & Thiel, M.
After detachment from benthic habitats, the epibiont assemblages on floating seaweeds undergo substantial changes, but little is known regarding whether succession varies among different seaweed species. Given that floating algae may represent a limiting habitat in many regions, rafting organisms may be unselective and colonize any available seaweed patch at the sea surface. This process may homogenize rafting assemblages on different seaweed species, which our study examined by comparing the assemblages on benthic and floating individuals of the fucoid seaweeds Fucus vesiculosus and Sargassum muticum in the northern Wadden Sea (North Sea). Species richness was about twice as high on S. muticum as on F. vesiculosus, both on benthic and floating individuals. In both seaweed species benthic samples were more diverse than floating samples. However, the species composition differed significantly only between benthic thalli, but not between floating thalli of the two seaweed species. Separate analyses of sessile and mobile epibionts showed that the homogenization of rafting assemblages was mainly caused by mobile species. Among these, grazing isopods from the genus Idotea reached extraordinarily high densities on the floating samples from the northern Wadden Sea, suggesting that the availability of seaweed rafts was indeed limiting. Enhanced break-up of algal rafts associated with intense feeding by abundant herbivores might force rafters to recolonize benthic habitats. These colonization processes may enhance successful dispersal of rafting organisms and thereby contribute to population connectivity between sink populations in the Wadden Sea and source populations from up-current regions.
Año: 2015
Palabras claves: Epibiota; Wadden Sea; Population Connectivity; Habitat Destruction; Migration; Dispersal.
Referencia APA: Gutow, L., Beermann, J., Buschbaum, C., M. Rivadeneira, M., & Thiel, M. (2015). Castaways can't be choosers — Homogenization of rafting assemblages on floating seaweeds. Journal Of Sea Research, 95, 161-171.